PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca32113.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family LBD
Protein Properties Length: 197aa    MW: 21570.2 Da    PI: 6.3799
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca32113.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.32e-4114116199
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAeara....rdPvyGavgvilklqqqleqlkaela 95 
                 +CaaCk+lrrkC ++Cv+apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear+    rdPvyG+vg i+ lq+q+++l++el+
  Dca32113.1  14 PCAACKFLRRKCMSGCVFAPYFPPEEPHKFANVHKIFGASNVTKLLNDLLPHQREDAVNSLAYEAEARVsnnvRDPVYGCVGAISYLQRQVHRLQKELD 112
                 7******************************************************************96444489***********************9 PP

      DUF260  96 llke 99 
                 ++++
  Dca32113.1 113 AANA 116
                 9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.01813118IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-4014115IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MASSSSSSSS YNAPCAACKF LRRKCMSGCV FAPYFPPEEP HKFANVHKIF GASNVTKLLN  60
DLLPHQREDA VNSLAYEAEA RVSNNVRDPV YGCVGAISYL QRQVHRLQKE LDAANADLLR  120
YACHDISTTP PPPPPPPPPP LPPPPPPPSP FYPPSDDQNT IACIVGNNFE SFPNFLPWNE  180
NIDPRGGSVD DHHQGNL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00581DAPTransfer from AT5G63090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678837.12e-79PREDICTED: protein LATERAL ORGAN BOUNDARIES
RefseqXP_010678838.12e-79PREDICTED: protein LATERAL ORGAN BOUNDARIES
SwissprotQ9FML43e-78LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A0J8CA812e-79A0A0J8CA81_BETVU; Uncharacterized protein
STRINGPOPTR_0015s09370.14e-76(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.42e-71LBD family protein